Berre, I. et al. (2020) “Verification benchmarks for single-phase flow in three-dimensional fractured porous media,” Advances in Water Resources, xxx.

Bui, Q.M., Elman, H. and Moulton, J.D. (2017) “Algebraic multigrid preconditioners for multiphase flow in porous media,” SIAM J. Sci. Comput., 39(5), pp. S662–S680. doi:10.1137/16M1082652.

Bui, Q.M., Wang, L. and Osei-Kuffuor, D. (2018) “Algebraic multigrid preconditioners for two-phase flow in porous media with phase transitions,” Advances in Water Resources, 114, pp. 19–28. doi:10.1016/j.advwatres.2018.01.027.

Freshley, M. et al. (2014) “Advanced Simulation Capability for Environmental Management Initial User Release,” in Proceedings of the Waste Management Conference.

Garimella, R.V. et al. (2014) “Mesh infrastructure for coupled multiprocess geophysical simulations,” Procedia Engineering, 82, pp. 34–45. doi:10.1016/j.proeng.2014.10.371.

Libera, A. et al. (2019) “Climate change impact on residual contaminants under sustainable remediation,” Journal of Contaminant Hydrology, 226, p. 103518. doi:10.1016/j.jconhyd.2019.103518.

Lipnikov, K. et al. (2016) “The mimetic finite difference method for elliptic and parabolic problems with a staggered discretization of diffusion coefficient,” J. Comput. Phys., 305, pp. 111–126. doi:10.1016/j.jcp.2015.10.031.

Lipnikov, K., Moulton, D. and Svyatskiy, D. (2016) “New preconditioning strategy for Jacobian-free solvers for variably saturated flows with Richards equation,” Adv. Water Resour., 94, pp. 11–22. doi:10.1016/j.advwatres.2016.04.016.

Manzini, G. et al. (2017) “Convergence analysis of the mimetic finite difference method for elliptic problems with staggered discretizations of diffusion coefficients,” SIAM J. Numer. Anal., 55(6), pp. 2956–2981. doi:10.1137/16M1108479.

Wainwright, H. et al. (2015) “Advanced simulation capability for environmental management, integrated toolsets and simulator to enhance public communication,” in Proceedings of the Waste Management Conference.

Wainwright, H. et al. (2016) “Effective long-term monitoring strategies by integrating reactive transport models with in situ geochemical measurements,” in Proceedings of the Waste Management Conference.

Wainwright, H. et al. (2017) “Coupling big data analytics and reactive transport modeling for cost-effective groundwater monitoring,” in Proceedings of the Waste Management Conference.

Wainwright, H. et al. (2020) “Sustainable Remediation in Complex Geologic Systems,” in Scott, R.A. (ed.) Encyclopedia of Inorganic and Bioinorganic Chemistry. doi:10.1002/9781119951438.eibc2562.

Abolt, C.J. et al. (2018) “Microtopographic control on the ground thermal regime in ice wedge polygons,” The Cryosphere, 12, pp. 1957–1968.

Abolt, C.J. et al. (2020) “Feedbacks between surface deformation and permafrost degradation in ice wedge polygons, Arctic Coastal Plain, Alaska,” Journal of Geophysical Research: Earth Surface, 125, p. e2019JF005349. doi:10.1029/2019JF005349.

Atchley, A.L. et al. (2015) “Using field observations to inform thermal hydrology models of permafrost dynamics with ATS (v0.83),” Geoscientific Model Development, 8(9), pp. 2701–2722. doi:10.5194/gmd-8-2701-2015.

Atchley, A.L. et al. (2016) “Influences and interactions of inundation, peat, and snow on active layer thickness,” Geophysical Research Letters, 43, pp. 5116–5123. doi:10.1002/2016GL068550.

Coon, E.T. et al. (2019) “Exploring the Use of Novel Programming Models in Land Surface Models,” in 2019 IEEE/ACM Parallel Applications Workshop, Alternatives To MPI (PAW-ATM), pp. 1–10. doi:10.1109/PAW-ATM49560.2019.00006.

Coon, E.T. et al. (2020) “Coupling surface flow and subsurface flow in complex soil structures using mimetic finite differences,” Advances in Water Resources, 144, p. 103701. doi:10.1016/j.advwatres.2020.103701.

Coon, E.T., Moulton, J.D. and Painter, S.L. (2016) “Managing complexity in simulations of land surface and near-surface processes,” Environmental Modelling & Software, 78, pp. 134–149. doi:10.1016/j.envsoft.2015.12.017.

Cromwell, E. et al. (2021) “Estimating Watershed Subsurface Permeability From Stream Discharge Data Using Deep Neural Networks,” Frontiers in Earth Science, 9, p. 3. doi:10.3389/feart.2021.613011.

Dubey, A. et al. (2017) “Software Process for Multiphysics Multicomponent Codes,” in Carver, J., Chue Hong, N., and Thiruvathukal, G.K. (eds) Software Engineering for Science. Chapman, pp. 632–641. doi:10.1201/9781315368924.

Grenier, C. et al. (2018) “Groundwater flow and heat transport for systems undergoing freeze-thaw: Intercomparison of numerical simulators for 2D test cases,” Advances in Water Resources, 114, pp. 196–218. doi:10.1016/j.advwatres.2018.02.001.

Hamm, A. and Frampton, A. (2021) “Impact of lateral groundwater flow on hydrothermal conditions of the active layer in a high arctic hillslope setting,” The Cryosphere Discussions, pp. 1–26. doi:10.5194/tc-2021-60.

Harp, D.R. et al. (2016) “Effect of soil property uncertainties on permafrost thaw projections: a calibration-constrained analysis,” The Cryosphere, 10(1), pp. 341–358. doi:10.5194/tc-10-341-2016.

Jafarov, E.E. et al. (2018) “Modeling the role of preferential snow accumulation in through talik development and hillslope groundwater flow in a transitional permafrost landscape,” Environmental Research Letters, 13(10), p. 105006. doi:10.1088/1748-9326/aadd30.

Jafarov, E.E. et al. (2020) “Estimation of subsurface porosities and thermal conductivities of polygonal tundra by coupled inversion of electrical resistivity, temperature, and moisture content data,” The Cryosphere, 14(1), pp. 77–91. doi:10.5194/tc-14-77-2020.

Jan, A., Coon, E.T., Graham, J.D., et al. (2018) “A subgrid approach for modeling microtopography effects on overland flow,” Water Resources Research, 54, pp. 6153–6167. doi:10.1029/2017WR021898.

Jan, A., Coon, E.T., Painter, R., S.L. Garimella, et al. (2018) “An intermediate-scale model for thermal hydrology in low-relief permafrost-affected landscapes,” Computational Geosciences, 22, pp. 163–177.

Jan, A., Coon, E.T. and Painter, S.L. (2020) “Evaluating integrated surface/subsurface permafrost thermal hydrology models in ATS (v0.88) against observations from a polygonal tundra site,” Geoscientific Model Development, 13(5), pp. 2259–2276. doi:10.5194/gmd-2019-265.

Kollet, S. et al. (2017) “The integrated hydrologic model intercomparison project, IH-MIP2: A second set of benchmark results to diagnose integrated hydrology and feedbacks,” Water Resources Research, 53, pp. 867–890. doi:10.1002/2016WR019191.

Molins, S. et al. (2022) “A Multicomponent Reactive Transport Model for Integrated Surface-Subsurface Hydrology Problems,” Water Resources Research, 58(8), p. e2022WR032074. doi:10.1029/2022WR032074.

Özgen-Xian, I. et al. (2020) “Wavelet-based local mesh refinement for rainfall-runoff simulations,” Journal of Hydroinformatics [Preprint].

Özgen-Xian, I. et al. (2023) “Understanding the hydrological response of a headwater-dominated catchment by analysis of distributed surface–subsurface interactions,” Scientific Reports, 13(1), p. 4669. doi:10.1038/s41598-023-31925-w.

Painter, S.L. et al. (2016) “Integrated surface/subsurface permafrost thermal hydrology: Model formulation and proof-of-concept simulations,” Water Resources Research, 22, pp. 6062–6077. doi:10.1002/2015WR018427.

Painter, S.L., Moulton, J.D. and Wilson, C.J. (2013) “Modeling challenges for predicting hydrologic response to degrading permafrost,” Hydrogeol. J., 21(1), pp. 221–224. doi:10.1007/s10040-012-0917-4.

Rathore, S.S. et al. (2021) “On the Reliability of Parameter Inferences in a Multiscale Model for Transport in Stream Corridors,” Water Resources Research, 57(5), p. e2020WR028908. doi:10.1029/2020WR028908.

Schuh, C., Frampton, A. and Christiansen, H.H. (2017) “Soil moisture redistribution and its effect on inter-annual active layer temperature and thickness variations in a dry loess terrace in Adventdalen, Svalbard,” The Cryosphere, 11, pp. 635–651.

Sjöberg, Y. et al. (2016) “Thermal effects of groundwater flow through subarctic fens: A case study based on field observations and numerical modeling,” Water Resources Research, 52, pp. 1591–1606. doi:10.1002/2015WR017571.

Sjöberg, Y. et al. (2021) “Permafrost Promotes Shallow Groundwater Flow and Warmer Headwater Streams,” Water Resources Research, 57(2), p. e2020WR027463. doi:10.1029/2020WR027463.

Xu, Z. et al. (2018) “A Reactive Transport Modeling Approach for Understanding Concentration-Discharge in East River, Colorado,” in Computational Methods of Water Resources XXII Conference.

Xu, Z. et al. (2022) “Understanding the Hydrogeochemical Response of a Mountainous Watershed Using Integrated Surface-Subsurface Flow and Reactive Transport Modeling,” Water Resources Research, 58(8), p. e2022WR032075. doi:10.1029/2022WR032075.